sourcepredict
stable
Contents:
Introduction
Installation
Usage
Output
Methods
Custom sources
Adding new sources to an existing source file
Sourcepredict example 1: Gut host species prediction
Sourcepredict example2: Estimating source proportions
sourcepredict
Docs
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Welcome to sourcepredict’s documentation!
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Welcome to sourcepredict’s documentation!
¶
Homepage:
github.com/maxibor/sourcepredict
Contents:
Introduction
Installation
Usage
Running sourcepredict on the test dataset
Command line interface
Command line arguments
Choice of the taxonomic classifier
Output
SourcePredict result file
Embedding csv file
Methods
Prediction of unknown sources proportion
Prediction of known source proportion
Combining unknown and source proportion
Custom sources
Pipeline installation
Running the pipeline
Adding new sources to an existing source file
Sourcepredict example 1: Gut host species prediction
Preparing the data
Sourcepredict
Sourcetracker2
Conclusion
Sourcepredict example2: Estimating source proportions
Preparing mixed samples
Sourcepredict
Sourcetracker2
Conclusion
Indices and tables
¶
Index
Module Index
Search Page
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